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Unconditional Positivity-Preserving and Energy Stable Schemes for a Reduced Poisson-Nernst-Planck System

  • Iowa State University

Research output: Contribution to journal › Article › peer-review

Abstract

The Poisson-Nernst-Planck (PNP) system is a widely accepted model for simulation of ionic channels. In this paper, we design, analyze, and numerically validate a second order unconditional positivity-preserving scheme for solving a reduced PNP system, which can well approximate the three dimensional ion channel problem. Positivity of numerical solutions is proven to hold true independent of the size of time steps and the choice of the Poisson solver. The scheme is easy to implement without resorting to any iteration method. Several numerical examples further confirm the positivity-preserving property, and demonstrate the accuracy, efficiency, and robustness of the proposed scheme, as well as the fast approach to steady states.
Original languageAmerican English
Pages (from-to)1505-1529
Number of pages25
JournalCommunications in Computational Physics
Volume27
Issue number5
DOIs
StatePublished - Mar 1 2020

ASJC Scopus Subject Areas

  • Physics and Astronomy (miscellaneous)

Keywords

  • Biological channels
  • Diffusion models
  • Ion transport
  • Positivity

Disciplines

  • Numerical Analysis and Computation

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